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黄骥

黄骥,博士,教授,博士生导师。获南京农业大学“十佳学生工作者”、“优秀教育管理工作者”等称号,先后入选教育部“新世纪优秀人才”和南京农业大学“钟山学术新秀”计划,获南京农业大学优秀教学奖、大北农青年学者奖。
    

方式:huangji@njau.edu.cn  025-84399532

经历:

2005 年12月获南京农业大学博士学位

2008-2009年美国康奈尔大学博士后

2013-2014年美国Samuel Roberts Noble Foundation访问学者。

教学:

目前承担留学生分子生物学实验,研究生生物信息学,本科生应用文写作等课程。主持2项江苏省教改重点项目,获国家教学成果二等奖(排名第6),江苏省教学成果特等奖(排名第6)、南京农业大学教学成果特等奖(排名第2)、二等奖(排名第1)等。

科研:

从事水稻遗传育种以及作物生物信息学研究。

先后主持4项国家自然科学基金,以及教育部新世纪优秀人才基金、转基因重大专项子任务、江苏省自然科学基金等省部级以上科研项目,已在国内外刊物发表研究论文40多篇,被引用1600多次,授予国家发明专利 3 项。

学术服务:

1. Acta Physiologiae Plantarum, Associate editor(2016- )

2. Frontiers in Plant Science, topic editor 

  Research Topic: Construction of Regulatory Networks in Plant Abiotic Stress Responses

3. 担任The Plant Cell, The Plant Journal, Nucleic Acids Research, J Exp Bot, Plant Mol Biol, Planta, JIPB, MGG, Plant Genome, Gene, DNA and Cell Biology, Field Crop Res,  Environmental and Experimental Botany, Plos One, Scientific Reports, Plant Physiol Biochem, Plant Growth Regul,Plant Signal Behav等刊物的审稿人。

生物信息学数据库/工具:

1. 序列综合分析软件:BioXM

2. 基于降解组的植物miRNA与靶基因互作和调控网络数据库:DPMIND

3.基于全降解组的植物miRNA靶基因预测和验证平台:WPMIAS

Crop Bioinformatics Group 网站:https://cbi.njau.edu.cn

欢迎对作物产量(籽粒形成)以及生物信息学、作物计算生物学有兴趣的学生加入!

发表论文(*通讯作者,$本科生):

Yuhan Fei, Yiyang Mao$, Chengji Shen$, Rui Wang, Hongsheng Zhang, Ji Huang*. WPMIAS: Whole-degradome-based Plant MicroRNA-Target Interaction Analysis Server. Bioinformatics, 2019, DOI:10.1093/bioinformatics/btz820

Wang, C.# , Yu, H.# , Huang, J.#, Wang, W., Faruquee, M., Zhang, F., Zhao, X., Fu, B., Chen, K., Zhang, H., Tai, S., Wei, C., McNally, K. L., Alexandrov, N., Gao, X., Li, J., Li, Z., Xu, J. and Zheng, T. Towards a deeper haplotype mining of complex traits in rice with RFGB v2.0. Plant Biotechnology Journal, 2019, doi:10.1111/pbi.13215 (#Co-first author)

Rui Wang; Zhongyi Yang; Yuhan Fei; Jiejie Feng; Hui Zhu$; Fang Huang; Hongsheng Zhang; Ji Huang*.Construction and analysis of Degradome-Dependent MicroRNA Regulatory Networks in Soybean. BMC Genomics, 2019,20:534

 Xiuying Gao, Jiaqi Zhang, Xiaojun Zhang, Jun Zhou$, Zhisheng Jiang$, Peng Huang, Zhengbin Tang, Yongmei Bao, Jinping Cheng, Haijuan Tang, Wenhua Zhang, Hongsheng Zhang, and Ji Huang*. Rice qGL3/OsPPKL1 Functions with the GSK3/SHAGGY-Like Kinase OsGSK3 to Modulate Brassinosteroid Signaling. The Plant Cell, 2019, 31:1077-1093

Ji Huang*, Ruqin Wang, Xinbin Dai, Jiejie Feng, Hongsheng Zhang, Patrick X. Zhao*. A microRNA biogenesis-like pathway for producing phased small interfering RNA from a long non-coding RNA in rice. Journal of Experimental Botany, 2019,70(6):1767-1774. 

Cao WL, Yu Y, Li MY, Luo J, Wang RS, Tang HJ, Huang J, Wang JF, Zhang HS, Bao YM*. OsSYP121 Accumulates at Fungal Penetration Sites and Mediates Host Resistance to Rice Blast. Plant Physiol. 2019 Apr;179(4):1330-1342

 Huang X, Feng J, Wang R, Zhang H, Huang J*. Comparative analysis of microRNAs and their targets in the roots of two cultivars with contrasting salt tolerance in rice (Oryza sativa L.). Plant Growth Regul, 2019, 87:139-148

 Yuan X, Huang P, Wang R, Li H, Lv X, Duan M, Tang H, Zhang H*, Huang J*. A zinc finger transcriptional repressor confers pleiotropic effects on rice growth and drought tolerance by down-regulating stress-responsive genes. Plant and Cell Physiol. 2018, 59(10): 2129-2142.

Fei Y, Wang R$, Li H, Liu S$, Zhang H, Huang J*. DPMIND: Degradome-based Plant MiRNA-Target Interaction and Network Database, Bioinformatics. 2018, 34:1618-1620.

Wang X, Zou B, Shao Q, Cui Y, Lu S, Zhang Y, Huang Q, Huang J*, Hua J*. Natural variation reveals that OsSAP16 controls low-temperature germination in rice. Journal of Experimental Botany, 2018 Jan 23;69(3):413-421.

 Xu J, Chen Y, Qian L, Mu R, Yuan X, Fang H, Huang X, Xu E, Zhang H, Huang J*. A Novel RNA-Binding Protein Involves ABA Signaling by Post-transcriptionally Repressing ABI2. Front Plant Sci. 2017, 8:24.

  Zhang Y, Lan H, Shao Q, Wang R, Chen H, Tang H, Zhang H*, Huang J*. An A 20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa L.). Journal of Experimental Botany 2016, 67(1):315-326

Yuan, X,Sun, H,Tang, Z,Tang, H,Zhang, H, Huang, J*. A Novel Little Membrane Protein Confers Salt Tolerance in Rice (Oryza sativa L.),Plant Molecular Biology Reporter, 2016, 34:524–532

 Fang H, Meng Q, Zhang H, Huang J*. Knock-down of a RING finger gene confers cold tolerance. Bioengineered. 2016, 7(1):39-45

Xu J, Huang X, Lan H, Zhang H, Huang J*. Rearrangement of nitrogen metabolism in rice (Oryza sativa L.) under salt stress. Plant Signal Behav. 2016, 11(3):e1138194

 Fang H, Meng Q, Xu J, Tang H, Tang S, Zhang H*, Huang J*. Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice. Plant Mol Biol. 2015 87(4-5):441-458.

  Gao X, Zhang X, Lan H, Huang J, Wang J, Zhang H. The additive effects of GS3 and qGL3 on rice grain length regulation revealed by genetic and transcriptome comparisons. BMC Plant Biol. 2015, 15:156

 Xu J, Lan H, Fang H, Huang X, Zhang H*, Huang J*. Quantitative proteomic analysis of the rice (Oryza sativa L.) salt response. PLoS One. 2015, 10(3):e0120978

Li YS, Sun H, Wang ZF, Duan M, Huang SD, Yang J, Huang J*, Zhang HS. A novel nuclear protein phosphatase 2C negatively regulated by ABL1 is involved in abiotic stress and panicle development in rice. Molecular Biotechnology, 2013, 54(2):703-710

Lan HX, Wang ZF, Wang QH, Wang MM, Bao YM, Huang J*, Zhang HS*. Characterization of a vacuolar zinc transporter OZT1  in rice (Oryza sativa L.). Mol Biol Rep 2013, 40(2):1201-1210

 Zhang X#, Wang J#, Huang J#, Lan H, Wang C, Yin C, Wu Y, Tang H, Qian Q, Li J, Zhang H. Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice, Proc Natl Acad Sci USA 2012, 109(52):21534-21539(#Co-first author)

 Huang J, Sun S, Xu D, Lan H, Sun H, Wang Z, Bao Y, Wang J, Tang H, Zhang HS. A TFIIIA-type zinc finger protein confers multiple abiotic stress tolerances in transgenic rice (Oryza sativa L.). Plant Mol Biol. 2012,80(3):337-350

Wang Z, Chen Z, Cheng J, Lai Y, Wang J, Bao Y, Huang J*, Zhang HS*. QTL analysis of Na+ and K+ concentrations in roots and shoots under different levels of NaCl stress in rice (Oryza sativa L.). PLoS One, 2012, 7(12): e51202.

Sun H, Huang X, Xu XJ, Lan HX, Huang J*, Zhang HS*. ENAC1, a NAC transcription factor, is an early and transient response regulator induced by abiotic stress in rice (Oryza sativa L.). Molecular Biotechnology 2012 ,52(2):101-110

Wang Z, Cheng J, Chen Z, Huang J, Bao Y, Wang J, Zhang H*. Identification of QTLs with main, epistatic and QTL × environment interaction effects for salt tolerance in rice seedlings under different salinity conditions. Theor Appl Genet. 2012 Aug;125(4):807-815.

Bao YM, Sun SJ, Li M, Li L, Cao WL, Luo J, Tang HJ, Huang J, Wang ZF, Wang JF, Zhang HS*. Overexpression of the Qc-SNARE gene OsSYP71 enhances tolerance to oxidative stress and resistance to rice blast in rice (Oryza sativa L.). Gene. 2012 Aug 10;504(2):238-244

 Chen X, Gu Z, Xin D, Hao L, Liu C, Huang J, Ma B, Zhang H*. Identification and characterization of putative CIPK genes in maize.J Genet Genomics. 2011, 38(2):77-87.

Shi XL, Wang JF, Bao YM, Li PF, Xie LJ, Huang J*, Zhang HS*. Identification and analysis the quantitative trait loci for resistance to leaf blast in Heikezijing with multiple isolates inoculation. Phytopathology 2010, 100: 822-829

 Sun SJ, Guo SQ, Yang X, Bao YM, Tang HJ, Sun H, Huang J*, Zhang HS*. Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice. Journal of Experimental Botany, 2010, 61(10):2807-2818

Huang J, Sun SJ, Xu DQ, Yang X, Bao YM, Wang ZF, Tang HJ, Zhang HS*. Increased tolerance of rice to cold, drought and oxidative stresses mediated by the overexpression of a gene that encodes the zinc finger protein ZFP245. Biochemical and Biophysical Research Communications, 2009, 389: 556-561

Liu WY, Wang MM, Huang J*, Tang HJ, Lan HX, Zhang HS*. The OsDHODH1 gene is involved in salt and drought tolerance in rice. Journal of Integrative Plant Biology,2009, 51(9): 825-833